NAME

Bio::SeqAlignment::Components::SeqMapping::Mapper Components that map sequences to reference databases

VERSION

version 0.03

SYNOPSIS

use Bio::SeqAlignment::Components::SeqMapping::Mapper;
use Bio::SeqAlignment::Components::SeqMapping::Mapper::ComponentName;

DESCRIPTION

This module loads all the components that can actually map sequences to a reference database. If you don't want to nuke your namespace with all the components, you can load them as needed by using the specific component name, e.g.:

use Bio::SeqAlignment::Components::SeqMapping::Mapper::ComponentName;

where ComponentName is the name of the component you need. If you choose violence, you can load all the components at once by using:

use Bio::SeqAlignment::Components::SeqMapping::Mapper;

COMPONENTS

• Generic

  This module provides a Generic sequence mapping that not only must consume a Dataflow role but also must implement a series of methods that are required for the mapping to work. These methods are detailed in the documentation of the module itself. This module is primarily intended for development of a new mapping module, without having to author a new module. The user can simply compose a Dataflow role into Generic module and implement the required methods in a Perl script, effectively "Jupyterizing" (as in Jupyter notebook, not the planet) the development of a new mapping module. Once the details have been ironed out, one hopefully would author a fuly fledged module, using an appropriate OO framework, such as Moose, Moo, Class::Tiny that can compose roles. See the documentation of the module for more details and examples of usage.

AUTHOR

Christos Argyropoulos <chrisarg@cpan.org>

COPYRIGHT AND LICENSE

This software is copyright (c) 2024 by Christos Argyropoulos.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.