- AUTHOR - Mark A. Jensen
Bio::Tools::Run::BlastPlus - A wrapper for NCBI's blast+ suite
Give standard usage here
Blast+ is NCBI's successor to the
blastall family of programs.
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
firstname.lastname@example.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list:
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
AUTHOR - Mark A. Jensen
Email maj -at- fortinbras -dot- us
Describe contact details here
Additional contributors names and emails here
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : my $obj = new Bio::Tools::Run::BlastPlus(); Function: Builds a new Bio::Tools::Run::BlastPlus object Returns : an instance of Bio::Tools::Run::BlastPlus Args :
Title : program_version Usage : $version = $bedtools_fac->program_version() Function: Returns the program version (if available) Returns : string representing location and version of the program Note : this works around the WrapperBase::version() method conflicting with the -version parameter for SABlast (good argument for not having getter/setters for these)
Title : package_version Usage : $version = $bedtools_fac->version() Function: Returns the BLAST+ package version (if available) Returns : string representing BLAST+ package version (may differ from version())