Bio::TreeIO::nexml - A TreeIO driver module for parsing NeXML tree files
use Bio::TreeIO; my $in = Bio::TreeIO->new(-file => 'data.nexml' -format => 'Nexml'); while( my $tree = $in->next_tree ) { }
This is a driver module for parsing tree data in a NeXML format. For more information on NeXML, visit http://www.nexml.org.
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : next_tree Usage : my $tree = $treeio->next_tree Function: Gets the next tree in the stream Returns : L<Bio::Tree::TreeI> Args : none
Title : doc Usage : $treeio->doc Function: Returns the biophylo nexml document object Returns : Bio::Phylo::Project Args : none or Bio::Phylo::Project object
Title : rewind Usage : $treeio->rewind Function: Resets the stream Returns : none Args : none
Title : write_tree Usage : $treeio->write_tree($tree); Function: Writes a tree onto the stream Returns : none Args : L<Bio::Tree::TreeI>
To install Bio::NexmlIO, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::NexmlIO
CPAN shell
perl -MCPAN -e shell install Bio::NexmlIO
For more information on module installation, please visit the detailed CPAN module installation guide.