Jillian Rowe


BioSAILs::Command - Command line wrapper for the BioX-Workflow-Command and HPC-Runner-Command libraries.


BioSAILs stands for Bioinformatic Standardized Analysis Information Layers, and it incorporates the following completely decoupled systems,

    1. BioX – Which is the analysis templating system.
    2. HPC-Runner – The workflow submission system.
    3. Bioinformatics software management system based on BioConda.

Please check out the website BioSAILs : https://biosails.abudhabi.nyu.edu/biosails


BioSAILs has been developed by a small Core Bioinformatics team that is focused on managing and analyzing substantial amounts of high throughput sequencing data.

For our in house workflows please see the Workflows menu at : https://biosails.abudhabi.nyu.edu/biosails/

Edit any workflow using our in house workflow editor by clicking 'View/Edit'.

Get Help

For additional help please see visit the Forums https://biosails.abudhabi.nyu.edu/biosails/index.php/forums

For issues please run

    biosails version

And attach the output to any issues or concerns on https://github.com/biosails/BioSAILs-Command/issues.


Jillian Rowe <jillian.e.rowe@gmail.com>


Copyright 2018- Jillian Rowe


This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.