Author image Alexandre Masselot
and 1 contributors

NAME

InSilicoSpectro::Databanks - parsing protein/nucleotides sequence databanks (fasta, uniprot...)

SYNOPSIS

$/="//\n"; while (<FDIN>){ my $dbu=InSilicoSpectro::Databanks::DBEntryUniprot->new; $dbu->readDat($_); my @tmp=$dbu->generateDerivedForms(); unless ( && @tmp){ $dbu->printFasta; $origSeq = $dbu->sequence; } foreach (@tmp){ if ($_->sequence ne $origSeq){ $_->printFasta; } } }

EXPORT

A list of functions that can be exported. You can delete this section if you don't export anything, such as for a purely object-oriented module.

FUNCTIONS

AUTHOR

Alexandre Masselot, <alexandre.masselot@genebio.com>

BUGS

Please report any bugs or feature requests to bug-insilicospectro-databanks@rt.cpan.org, or through the web interface at http://rt.cpan.org/NoAuth/ReportBug.html?Queue=InSilicoSpectro-Databanks. I will be notified, and then you'll automatically be notified of progress on your bug as I make changes.

ACKNOWLEDGEMENTS

COPYRIGHT & LICENSE

Copyright 2006 Alexandre Masselot, all rights reserved.

This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself.