InSilicoSpectro::Databanks - parsing protein/nucleotides sequence databanks (fasta, uniprot...)
$/="//\n"; while (<FDIN>){ my $dbu=InSilicoSpectro::Databanks::DBEntryUniprot->new; $dbu->readDat($_); my @tmp=$dbu->generateDerivedForms(); unless ( && @tmp){ $dbu->printFasta; $origSeq = $dbu->sequence; } foreach (@tmp){ if ($_->sequence ne $origSeq){ $_->printFasta; } } }
A list of functions that can be exported. You can delete this section if you don't export anything, such as for a purely object-oriented module.
Alexandre Masselot, <alexandre.masselot@genebio.com>
<alexandre.masselot@genebio.com>
Please report any bugs or feature requests to bug-insilicospectro-databanks@rt.cpan.org, or through the web interface at http://rt.cpan.org/NoAuth/ReportBug.html?Queue=InSilicoSpectro-Databanks. I will be notified, and then you'll automatically be notified of progress on your bug as I make changes.
bug-insilicospectro-databanks@rt.cpan.org
Copyright 2006 Alexandre Masselot, all rights reserved.
This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
To install InSilicoSpectro::Databanks, copy and paste the appropriate command in to your terminal.
cpanm
cpanm InSilicoSpectro::Databanks
CPAN shell
perl -MCPAN -e shell install InSilicoSpectro::Databanks
For more information on module installation, please visit the detailed CPAN module installation guide.