Metabolomics::Banks::PhytoHub - Perl extension for PhytoHub bank
Version 0.1 - init Version 0.2 - Completing object properties
use Metabolomics::Banks::PhytoHub;
Metabolomics::Banks::PhytoHub is a full package for Perl allowing to build a generic Perl bank object from PhytoHub bank resource.
use Metabolomics::Banks::PhytoHub qw( :all ) ;
## Description : new ## Input : $self ## Ouput : bless $self ; ## Usage : new() ;
## Description : get the list of metabolite entries from $source file and set the Metabolomics::Banks::PhytoHub object ## Input : $source (file from the metabolomics-references project) ## Output : an int as $entriesNb ## Usage : my ( $entriesNb ) = $self->getMetabolitesFromSource ( $source ) ;
## Description : building from a Metabolomics::Banks::PhytoHub object, a bank integrating each potential entry in a metabolomics format (POSITIVE or NEGATIVE forms) ## Input : $queryMode [POS|NEG] ## Output : int as $entryNb ## Usage : my $nb = $oBank->buildTheoPeakBankFromEntries() ;
## Description : init a new blood exposome entry ## Input : void ## Output : refEntry ## Usage : $self->__refPhytoHubEntry__() ;
## Description : PRIVATE method _getEntry_IS_A_METABOLITE on a refPhytoHubEntry object ## Input : void ## Output : $IS_A_METABOLITE ## Usage : my ( $IS_A_PRECURSOR ) = $entry->_getEntry_IS_A_METABOLITE () ;
## Description : PRIVATE method _getEntry_IS_A_PRECURSOR on a refPhytoHubEntry object ## Input : void ## Output : $IS_A_PRECURSOR ## Usage : my ( $IS_A_PRECURSOR ) = $entry->_getEntry_IS_A_PRECURSOR () ;
## Description : PRIVATE method _getEntry_INCHIKEY on a refPhytoHubEntry object ## Input : void ## Output : $INCHIKEY ## Usage : my ( $INCHIKEY ) = $entry->_getEntry_INCHIKEY () ;
## Description : PRIVATE method _getEntry_EXACT_MASS on a refPhytoHubEntry object ## Input : void ## Output : $EXACT_MASS ## Usage : my ( $EXACT_MASS ) = $entry->_getEntry_EXACT_MASS () ;
## Description : PRIVATE method _getEntry_PHYTOHUB_ID on a refPhytoHubEntry object ## Input : void ## Output : $PhytoHub_ID ## Usage : my ( $PhytoHub_ID ) = $entry->_getEntry_PHYTOHUB_ID () ;
## Description : PRIVATE method _getEntry_SMILES on a refPhytoHubEntry object ## Input : void ## Output : $SMILES ## Usage : my ( $SMILES ) = $entry->_getEntry_SMILES () ;
## Description : PRIVATE method _getEntry_MOLECULAR_FORMULA on a refPhytoHubEntry object ## Input : void ## Output : $COMPOUND_FORMULA ## Usage : my ( $COMPOUND_FORMULA ) = $entry->_getEntry_MOLECULAR_FORMULA () ;
## Description : PRIVATE method _getEntry_COMPOUND_NAME on a refPhytoHubEntry object ## Input : void ## Output : $COMPOUND_NAME ## Usage : my ( $COMPOUND_NAME ) = $entry->_getEntry_COMPOUND_NAME () ;
Franck Giacomoni, <franck.giacomoni at inrae.fr>
<franck.giacomoni at inrae.fr>
All information about Metabolomics::Banks::PhytoHub would be find here: https://services.pfem.clermont.inra.fr/gitlab/fgiacomoni/metabolomics-fragnot
Please report any bugs or feature requests to bug-Metabolomics-Fragment-Annotation at rt.cpan.org, or through the web interface at https://rt.cpan.org/Public/Dist/Display.html?Name=Metabolomics-Fragment-Annotation. I will be notified, and then you'll automatically be notified of progress on your bug as I make changes.
bug-Metabolomics-Fragment-Annotation at rt.cpan.org
You can find documentation for this module with the perldoc command.
perldoc Metabolomics::Fragment::Annotation
RT: CPAN's request tracker (report bugs here)
https://rt.cpan.org/Public/Dist/Display.html?Name=Metabolomics-Fragment-Annotation
AnnoCPAN: Annotated CPAN documentation
http://annocpan.org/dist/Metabolomics-Fragment-Annotation
CPAN Ratings
https://cpanratings.perl.org/d/Metabolomics-Fragment-Annotation
Search CPAN
https://metacpan.org/release/Metabolomics-Fragment-Annotation
Thank you to INRAE and All metabolomics colleagues.
CeCILL Copyright (C) 2019 by Franck Giacomoni
Initiated by Franck Giacomoni
followed by INRA PFEM team
Web Site = INRA PFEM
To install Metabolomics::Fragment::Annotation, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Metabolomics::Fragment::Annotation
CPAN shell
perl -MCPAN -e shell install Metabolomics::Fragment::Annotation
For more information on module installation, please visit the detailed CPAN module installation guide.