bc_get_info - Get information about a community file
bc_get_info -input_files my_communities.generic \ -output_prefix my_info.txt \ -info_type 'members'
This script reads a file containing biological communities and retrieves basic information from it, such as the names of the communities it contains and their counts, the ID of members and their description, or the file format. The information is displayed on screen unless an output prefix is provided.
Input file containing the communities to process. When providing communities in a format that supports only one community per file (e.g. gaas), you can provide multiple input files.
Path and prefix for the output file. The output is displayed on screen if no output prefix is provided. Default: none
Type of information to return, either:
'communities' for community names (in order of appearance) and their member count 'members' for member IDs (in no specific order) and their description 'format' for the file format
Default: info_type.default
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists.
Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:
http://bugzilla.open-bio.org/
Email florent.angly@gmail.com
To install Bio::Community, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Community
CPAN shell
perl -MCPAN -e shell install Bio::Community
For more information on module installation, please visit the detailed CPAN module installation guide.