Bio::AutomatedAnnotation::GeneNameOccurances - Parse the gene names from multiple GFF files and provide a matrix of matches.
version 1.133090
Parse the gene names from multiple GFF files and provide a matrix of matches. use Bio::AutomatedAnnotation::GeneNameOccurances;
my $obj = Bio::AutomatedAnnotation::GeneNameOccurances->new( gff_files => ['abc.gff','efg.gff','hij.gff'] ); my %all_gene_names = %{$obj->all_gene_names};
Returns a HashRef where the keys are all observed gene names and the values are the frequency of occurance.
Andrew J. Page <ap13@sanger.ac.uk>
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007
To install Bio::AutomatedAnnotation, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::AutomatedAnnotation
CPAN shell
perl -MCPAN -e shell install Bio::AutomatedAnnotation
For more information on module installation, please visit the detailed CPAN module installation guide.