HackaMol::Roles::ReadPdbxRole - parse PDBx/mmCIF files
version 0.050
my @atoms = HackaMol->new ->read_cif_atoms("some.cif");
The HackaMol::Roles::ReadPdbxRole provides methods (such as read_cif_atoms for building HM atoms) for pulling information from PDBx/mmcif. More info available in cif and more attributes are populated than via ReadPdbRole.
One argument: the filehandle Returns a list of HackaMol::Atom objects.
The implementation differs from the PDB parser in how models are handled. Each atom tracks the model number through the model_num attribute; the read_pdb_atoms adds configurations to each subsequent atom into t (with identical metadata) as model number increases. Still considering the best way to handle this.
HackaMol
HackaMol::Atom
HackaMol::Roles::MolReadRole
Protein Data Bank
Demian Riccardi <demianriccardi@gmail.com>
This software is copyright (c) 2017 by Demian Riccardi.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.
To install HackaMol, copy and paste the appropriate command in to your terminal.
cpanm
cpanm HackaMol
CPAN shell
perl -MCPAN -e shell install HackaMol
For more information on module installation, please visit the detailed CPAN module installation guide.