NAME
Bio::VertRes::Config::Recipes::BacteriaRnaSeqExpressionUsingTophat - Standard snp calling pipeline for bacteria
VERSION
version 1.133090
SYNOPSIS
RNA seq expression with Tophat use Bio::VertRes::Config::Recipes::BacteriaRnaSeqExpressionUsingTophat;
my $obj = Bio::VertRes::Config::Recipes::BacteriaRnaSeqExpressionUsingTophat->new(
database => 'abc',
limits => {project => ['Study ABC']},
reference => 'ABC',
reference_lookup_file => '/path/to/refs.index',
);
$obj->create;
AUTHOR
Andrew J. Page <ap13@sanger.ac.uk>
COPYRIGHT AND LICENSE
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007