/ 
Bio-VertRes-Config-1.133090
/ Bio::VertRes::Config::Recipes::VirusRnaSeqExpressionUsingBwa

NAME

Bio::VertRes::Config::Recipes::VirusRnaSeqExpressionUsingBwa - Standard snp calling pipeline for virus

VERSION

version 1.133090

SYNOPSIS

RNA seq expression with Bwa use Bio::VertRes::Config::Recipes::VirusRnaSeqExpressionUsingBwa;

my $obj = Bio::VertRes::Config::Recipes::VirusRnaSeqExpressionUsingBwa->new( 
  database => 'abc', 
  limits => {project => ['Study ABC']}, 
  reference => 'ABC', 
  reference_lookup_file => '/path/to/refs.index',
  );
$obj->create;

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007