NormaliseFasta - Take in a Fasta file, check for invalid characters and build a corrected file if needed. This is needed for NCBI makeblastdb which doesnt like the pipe character in the sequence name
use Bio::MLST::NormaliseFasta;
my $output_fasta = Bio::MLST::NormaliseFasta->new( fasta_filename => 'Filename.fasta'
); $output_fasta->processed_fasta_filename();
To install Bio::MLST::Types, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::MLST::Types
CPAN shell
perl -MCPAN -e shell install Bio::MLST::Types
For more information on module installation, please visit the detailed CPAN module installation guide.