Bio::MLST::OutputFasta
Take in two hashes, both containing sequence names and sequences and output fasta files.
use Bio::MLST::OutputFasta;
my $output_fasta = Bio::MLST::OutputFasta->new( matching_sequences => \%matching_sequences, non_matching_sequences => \%non_matching_sequences, output_directory => '/path/to/output', input_fasta_file => '/path/to/fasta' ); $output_fasta->create_files();
path-help@sanger.ac.uk
To install Bio::MLST::Types, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::MLST::Types
CPAN shell
perl -MCPAN -e shell install Bio::MLST::Types
For more information on module installation, please visit the detailed CPAN module installation guide.