Bio::Tools::Seg - parse Seg output (filter low complexity protein sequence)
use Bio::Tools::Seg; my $parser = new Bio::Tools::Seg(-fh =>$filehandle ); while( my $seg_feat = $parser->next_result ) { #do something #eg push @seg_feat, $seg_feat; }
Parser for Seg output
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : my $obj = new Bio::Tools::Seg(); Function: Builds a new Bio::Tools::Seg object Returns : Bio::Tools::Seg Args : -fh/-file => $val, # for initing input, see Bio::Root::IO
Title : next_result Usage : my $feat = $seg->next_result Function: Get the next result set from parser data Returns : Bio::SeqFeature::Generic Args : none
Title : create_feature Usage : obj->create_feature(\%feature) Function: Internal(not to be used directly) Returns : Args :
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.