bp_seq_length.pl - lists the number of bases and number of sequences in specified sequence database files
bp_seq_length.pl *.fa
bp_seq_length.pl will report the total number of residues and total number of individual sequences contained within a specified sequence database file.
-f/--format - Specify the database format ('fasta' is default). This script uses SeqIO and as such formats are limited to those which SeqIO system supports.
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
https://redmine.open-bio.org/projects/bioperl/
Jason Stajich <jason@bioperl.org>
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.