Author image Erick Antezana

Changes for version 1.10

Documentation

perl modules for CCO and OBO ontologies
Collects the ancestor terms (list of IDs) from a given term (existing ID) in the given OBO ontology.
Collects the descendent terms (list of IDs) from a given term (existing ID) in the given OBO ontology.
Gene Ontology (in OBO) to OWL translator.
OBO to OWL translator.
OBO to RDF translator.
Obsolete terms vs their definitions.
Obsolete terms vs their names.
OWL to OBO translator (oboinowl mapping).

Modules

A module for describing Cell Cycle Ontology (CCO) identifiers. Its namespace, subnamespace and number are stored.
An implementation of a set of OBO::CCO::CCO_ID objects.
A map between CCO IDs and term names.
A GoaAssociationSet implementation
A GOA associations to OBO translator.
An IntAct to OBO parser/filter.
An interaction from IntAct
An IntAct to OBO parser/filter manager.
An interactor from IntAct
A NCBI taxonomy to OBO translator.
A new IntAct to OBO parser/filter.
An orthoMCL data to OBO translator
A UniProt to OBO translator.
An IntAct XML parser
A database reference structure.
A definition structure of the current term. A term must have zero or one instance of this type per term description.
A GOA association record.
A mapping between a "local" ID space and a "global" ID space.
An ontology holding terms and their relationships.
A relationship between two terms or two relationships within an ontology.
A type of relationship type in an ontology.
A term synonym.
A synonym type definition. It should contain a synonym type name, a space, a quote enclosed description, and an optional scope specifier.
A universal/term/class/concept in an ontology.
An OBO (Open Biomedical Ontologies) file parser.
An OWL parser (oboInOwl mapping).
A Dbxref set implementation.
A Set implementation of object IDs.
An implementation of a set of ontology objects.
A set of ontologies.
A Set implementation.
A Set implementation of Synonyms.
A Set implementation of Synonym Types.
A Set implementation.