Documentation

perl modules for CCO and OBO ontologies
Collects the ancestor terms (list of IDs) from a given term (existing ID) in the given OBO ontology.
Collects the descendent terms (list of IDs) from a given term (existing ID) in the given OBO ontology.
Gene Ontology (in OBO) to OWL translator.
OBO to OWL translator.
Obsolete terms vs their definitions.
Obsolete terms vs their names.
OWL to OBO translator (oboinowl mapping).

Modules

Reference structure.
A definition structure of the current term. A term must have zero or one instance of this type per term description.
A GOA association record
A mapping between a "local" ID space and a "global" ID space
An interaction from IntAct
An interactor from IntAct
An ontology holding terms and their relationships
A relationship between two terms or two relationships within an ontology.
A type of relationship type in an ontology
A term synonym
A synonym type definition. It should contain a synonym type name, a space, a quote enclosed description, and an optional scope specifier.
A universal/term/class/concept in an ontology
A GOA associations to OBO translator.
An IntAct to OBO parser/filter.
An IntAct to OBO parser/filter manager.
A NCBI taxonomy to OBO translator.
A new IntAct to OBO parser/filter.
An OBO (Open Biomedical Ontologies) file parser.
An OWL parser (oboInOwl mapping).
An orthoMCL data to OBO translator
A UniProt to OBO translator.
A module for describing Cell Cycle Ontology (CCO) identifiers. Its namespace, subnamespace and number are stored.
An implementation of a set of CCO::Util::CCO_ID objects.
A map between CCO IDs and term names.
A DbxrefSet implementation
A GoaAssociationSet implementation
A Set implementation of object Ids
An implementation of a set of ontology objects
A set of ontologies
A Set implementation
A Set implementation of Synonyms
A Set implementation of Synonym Types
A Set implementation
An IntAct XML parser