Changes for version 1.01

  • First version, including methods to calculate codon usage bias indice at both codon and sequence levels.


a program to calculate CAI for codons
a program to calculate tAI of each codon
a program to calculate sequence codon usage bias indices and other sequence parameters.


the root class for the whole distribution of
This is the parent class for all classs processing codon usage bias (CUB).
A module to calculate codon usage bias (CUB) indice for protein-coding sequences
A package processing genetic codon table
a module processing sequence object
a package to parse sequence file if module Bio::SeqIO is unavailable in the system.
a class to summarize features of sequences.