Metabolomics-Fragment-Annotation

Changes for version 0.6.4 - 2021-08-10

POD Update
multiAnnotation support in matching algo and writers
PeakForest REST API integration (GC/MS)
Compute scores for GC/MS
supporting CSV and TSV as inputs (sniffer)
generate html output format

Documentation

update_resources.pl

Utility to update all databases referenced in metabolomics-references project.

Modules

Metabolomics::Banks

Perl extension to build metabolite banks for metabolomics

Metabolomics::Banks::AbInitioFragments

Perl extension for Ab Initio Fragments generator

Metabolomics::Banks::BloodExposome

Perl extension for BloodExposome bank

Metabolomics::Banks::Knapsack

Perl extension for Knapsack bank

Metabolomics::Banks::MaConDa

Perl extension for contaminants bank building

Metabolomics::Banks::PeakForest

Perl extension for PeakForest bank

Metabolomics::Banks::PhytoHub

Perl extension for PhytoHub bank

PeakForest::REST_Client::ApiFactory

constructs APIs to retrieve PeakForest::REST_Client objects

PeakForest::REST_Client::Configuration

holds the configuration for all PeakForest::REST_Client Modules

PeakForest::REST_Client::Role

a Moose role for the PeakForest REST API

Metabolomics::Formats::W4M

Perl W4M extension of the metabolomics::fragment::annotation module

Metabolomics::Fragment::Annotation

Perl extension for fragment annotation in metabolomics

Metabolomics::Utils

Perl Utils extension metabolomics::fragment::annotation module

Provides

PeakForest::REST_Client::ApiClient

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/ApiClient.pm

PeakForest::REST_Client::ChromatographyApi

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/ChromatographyApi.pm

PeakForest::REST_Client::CompoundsApi

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/CompoundsApi.pm

PeakForest::REST_Client::InformationsApi

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/InformationsApi.pm

PeakForest::REST_Client::Object::Chromatography

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Chromatography.pm

PeakForest::REST_Client::Object::Compound

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Compound.pm

PeakForest::REST_Client::Object::FragmentationLcmsSpectrum

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/FragmentationLcmsSpectrum.pm

PeakForest::REST_Client::Object::FullscanGcmsSpectrum

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/FullscanGcmsSpectrum.pm

PeakForest::REST_Client::Object::FullscanGcmsSpectrumAllOf

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/FullscanGcmsSpectrumAllOf.pm

PeakForest::REST_Client::Object::FullscanLcmsSpectrum

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/FullscanLcmsSpectrum.pm

PeakForest::REST_Client::Object::GasChromatography

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/GasChromatography.pm

PeakForest::REST_Client::Object::GasChromatographyAllOf

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/GasChromatographyAllOf.pm

PeakForest::REST_Client::Object::Informations

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Informations.pm

PeakForest::REST_Client::Object::LiquidChromatography

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/LiquidChromatography.pm

PeakForest::REST_Client::Object::LiquidChromatographyAllOf

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/LiquidChromatographyAllOf.pm

PeakForest::REST_Client::Object::MassPeak

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/MassPeak.pm

PeakForest::REST_Client::Object::MassSpectrum

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/MassSpectrum.pm

PeakForest::REST_Client::Object::MassSpectrumAllOf

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/MassSpectrumAllOf.pm

PeakForest::REST_Client::Object::Nmr1dPeak

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Nmr1dPeak.pm

PeakForest::REST_Client::Object::Nmr1dPeakpattern

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Nmr1dPeakpattern.pm

PeakForest::REST_Client::Object::Nmr1dSpectrum

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Nmr1dSpectrum.pm

PeakForest::REST_Client::Object::Nmr1dSpectrumAllOf

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Nmr1dSpectrumAllOf.pm

PeakForest::REST_Client::Object::Nmr2dPeak

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Nmr2dPeak.pm

PeakForest::REST_Client::Object::Nmr2dSpectrum

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Nmr2dSpectrum.pm

PeakForest::REST_Client::Object::Nmr2dSpectrumAllOf

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Nmr2dSpectrumAllOf.pm

PeakForest::REST_Client::Object::NmrSpectrum

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/NmrSpectrum.pm

PeakForest::REST_Client::Object::NmrSpectrumAllOf

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/NmrSpectrumAllOf.pm

PeakForest::REST_Client::Object::Spectrum

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Spectrum.pm

PeakForest::REST_Client::Role::AutoDoc

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Role/AutoDoc.pm

PeakForest::REST_Client::SpectraApi

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/SpectraApi.pm

Other files

To install Metabolomics::Fragment::Annotation, copy and paste the appropriate command in to your terminal.

cpanm

cpanm Metabolomics::Fragment::Annotation

CPAN shell

perl -MCPAN -e shell
install Metabolomics::Fragment::Annotation

For more information on module installation, please visit the detailed CPAN module installation guide.

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Changes for version 0.6.4 - 2021-08-10

Documentation

Modules

Provides

Other files

Module Install Instructions