Author image Franck Giacomoni
and 1 contributors

Changes for version 0.6.4 - 2021-08-10

  • POD Update
  • multiAnnotation support in matching algo and writers
  • PeakForest REST API integration (GC/MS)
  • Compute scores for GC/MS
  • supporting CSV and TSV as inputs (sniffer)
  • generate html output format

Documentation

Utility to update all databases referenced in metabolomics-references project.

Modules

Perl extension to build metabolite banks for metabolomics
Perl extension for Ab Initio Fragments generator
Perl extension for BloodExposome bank
Perl extension for Knapsack bank
Perl extension for contaminants bank building
Perl extension for PeakForest bank
Perl extension for PhytoHub bank
constructs APIs to retrieve PeakForest::REST_Client objects
holds the configuration for all PeakForest::REST_Client Modules
a Moose role for the PeakForest REST API
Perl W4M extension of the metabolomics::fragment::annotation module
Perl extension for fragment annotation in metabolomics
Perl Utils extension metabolomics::fragment::annotation module

Provides

in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/ApiClient.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/ChromatographyApi.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/CompoundsApi.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/InformationsApi.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Chromatography.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Compound.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/FragmentationLcmsSpectrum.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/FullscanGcmsSpectrum.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/FullscanGcmsSpectrumAllOf.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/FullscanLcmsSpectrum.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/GasChromatography.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/GasChromatographyAllOf.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Informations.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/LiquidChromatography.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/LiquidChromatographyAllOf.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/MassPeak.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/MassSpectrum.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/MassSpectrumAllOf.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Nmr1dPeak.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Nmr1dPeakpattern.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Nmr1dSpectrum.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Nmr1dSpectrumAllOf.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Nmr2dPeak.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Nmr2dSpectrum.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Nmr2dSpectrumAllOf.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/NmrSpectrum.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/NmrSpectrumAllOf.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Spectrum.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Role/AutoDoc.pm
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/SpectraApi.pm