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Bio-MAGE-2002-09-02_0
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Modules

Bio::MAGE::Array
Container module for classes in the MAGE Array package
Bio::MAGE::ArrayDesign
Container module for classes in the MAGE ArrayDesign package
Bio::MAGE::AuditAndSecurity
Container module for classes in the MAGE AuditAndSecurity package
Bio::MAGE::BQS
Container module for classes in the MAGE BQS package
Bio::MAGE::BioAssay
Container module for classes in the MAGE BioAssay package
Bio::MAGE::BioAssayData
Container module for classes in the MAGE BioAssayData package
Bio::MAGE::BioEvent
Container module for classes in the MAGE BioEvent package
Bio::MAGE::BioMaterial
Container module for classes in the MAGE BioMaterial package
Bio::MAGE::BioSequence
Container module for classes in the MAGE BioSequence package
Bio::MAGE::Description
Container module for classes in the MAGE Description package
Bio::MAGE::DesignElement
Container module for classes in the MAGE DesignElement package
Bio::MAGE::Experiment
Container module for classes in the MAGE Experiment package
Bio::MAGE::HigherLevelAnalysis
Container module for classes in the MAGE HigherLevelAnalysis package
Bio::MAGE
Container module for classes in the MAGE MAGE package
Bio::MAGE::Measurement
Container module for classes in the MAGE Measurement package
Bio::MAGE::Protocol
Container module for classes in the MAGE Protocol package
Bio::MAGE::QuantitationType
Container module for classes in the MAGE QuantitationType package
Bio::MAGE::SQLWriter
a module for exporting MAGE-OM objects to a database
Bio::MAGE::XMLWriter
a module for exporting MAGE-ML

Provides

Bio::MAGE::Array::Array
in Array/Array/Array.pm
Bio::MAGE::Array::ArrayGroup
in Array/ArrayGroup/ArrayGroup.pm
Bio::MAGE::Array::ArrayManufacture
in Array/ArrayManufacture/ArrayManufacture.pm
Bio::MAGE::Array::ArrayManufactureDeviation
in Array/ArrayManufactureDeviation/ArrayManufactureDeviation.pm
Bio::MAGE::Array::FeatureDefect
in Array/FeatureDefect/FeatureDefect.pm
Bio::MAGE::Array::Fiducial
in Array/Fiducial/Fiducial.pm
Bio::MAGE::Array::ManufactureLIMS
in Array/ManufactureLIMS/ManufactureLIMS.pm
Bio::MAGE::Array::ManufactureLIMSBiomaterial
in Array/ManufactureLIMSBiomaterial/ManufactureLIMSBiomaterial.pm
Bio::MAGE::Array::PositionDelta
in Array/PositionDelta/PositionDelta.pm
Bio::MAGE::Array::ZoneDefect
in Array/ZoneDefect/ZoneDefect.pm
Bio::MAGE::ArrayDesign::ArrayDesign
in ArrayDesign/ArrayDesign/ArrayDesign.pm
Bio::MAGE::ArrayDesign::CompositeGroup
in ArrayDesign/CompositeGroup/CompositeGroup.pm
Bio::MAGE::ArrayDesign::DesignElementGroup
in ArrayDesign/DesignElementGroup/DesignElementGroup.pm
Bio::MAGE::ArrayDesign::FeatureGroup
in ArrayDesign/FeatureGroup/FeatureGroup.pm
Bio::MAGE::ArrayDesign::PhysicalArrayDesign
in ArrayDesign/PhysicalArrayDesign/PhysicalArrayDesign.pm
Bio::MAGE::ArrayDesign::ReporterGroup
in ArrayDesign/ReporterGroup/ReporterGroup.pm
Bio::MAGE::ArrayDesign::Zone
in ArrayDesign/Zone/Zone.pm
Bio::MAGE::ArrayDesign::ZoneGroup
in ArrayDesign/ZoneGroup/ZoneGroup.pm
Bio::MAGE::ArrayDesign::ZoneLayout
in ArrayDesign/ZoneLayout/ZoneLayout.pm
Bio::MAGE::Association
in Association/Association.pm
Bio::MAGE::AuditAndSecurity::Audit
in AuditAndSecurity/Audit/Audit.pm
Bio::MAGE::AuditAndSecurity::Contact
in AuditAndSecurity/Contact/Contact.pm
Bio::MAGE::AuditAndSecurity::Organization
in AuditAndSecurity/Organization/Organization.pm
Bio::MAGE::AuditAndSecurity::Person
in AuditAndSecurity/Person/Person.pm
Bio::MAGE::AuditAndSecurity::Security
in AuditAndSecurity/Security/Security.pm
Bio::MAGE::AuditAndSecurity::SecurityGroup
in AuditAndSecurity/SecurityGroup/SecurityGroup.pm
Bio::MAGE::BQS::BibliographicReference
in BQS/BibliographicReference/BibliographicReference.pm
Bio::MAGE::Base
in Base/Base.pm
Bio::MAGE::BioAssay::BioAssay
in BioAssay/BioAssay/BioAssay.pm
Bio::MAGE::BioAssay::BioAssayCreation
in BioAssay/BioAssayCreation/BioAssayCreation.pm
Bio::MAGE::BioAssay::BioAssayTreatment
in BioAssay/BioAssayTreatment/BioAssayTreatment.pm
Bio::MAGE::BioAssay::Channel
in BioAssay/Channel/Channel.pm
Bio::MAGE::BioAssay::DerivedBioAssay
in BioAssay/DerivedBioAssay/DerivedBioAssay.pm
Bio::MAGE::BioAssay::FeatureExtraction
in BioAssay/FeatureExtraction/FeatureExtraction.pm
Bio::MAGE::BioAssay::Hybridization
in BioAssay/Hybridization/Hybridization.pm
Bio::MAGE::BioAssay::Image
in BioAssay/Image/Image.pm
Bio::MAGE::BioAssay::ImageAcquisition
in BioAssay/ImageAcquisition/ImageAcquisition.pm
Bio::MAGE::BioAssay::MeasuredBioAssay
in BioAssay/MeasuredBioAssay/MeasuredBioAssay.pm
Bio::MAGE::BioAssay::PhysicalBioAssay
in BioAssay/PhysicalBioAssay/PhysicalBioAssay.pm
Bio::MAGE::BioAssayData::BioAssayData
in BioAssayData/BioAssayData/BioAssayData.pm
Bio::MAGE::BioAssayData::BioAssayDatum
in BioAssayData/BioAssayDatum/BioAssayDatum.pm
Bio::MAGE::BioAssayData::BioAssayDimension
in BioAssayData/BioAssayDimension/BioAssayDimension.pm
Bio::MAGE::BioAssayData::BioAssayMap
in BioAssayData/BioAssayMap/BioAssayMap.pm
Bio::MAGE::BioAssayData::BioAssayMapping
in BioAssayData/BioAssayMapping/BioAssayMapping.pm
Bio::MAGE::BioAssayData::BioDataCube
in BioAssayData/BioDataCube/BioDataCube.pm
Bio::MAGE::BioAssayData::BioDataTuples
in BioAssayData/BioDataTuples/BioDataTuples.pm
Bio::MAGE::BioAssayData::BioDataValues
in BioAssayData/BioDataValues/BioDataValues.pm
Bio::MAGE::BioAssayData::CompositeSequenceDimension
in BioAssayData/CompositeSequenceDimension/CompositeSequenceDimension.pm
Bio::MAGE::BioAssayData::DerivedBioAssayData
in BioAssayData/DerivedBioAssayData/DerivedBioAssayData.pm
Bio::MAGE::BioAssayData::DesignElementDimension
in BioAssayData/DesignElementDimension/DesignElementDimension.pm
Bio::MAGE::BioAssayData::DesignElementMap
in BioAssayData/DesignElementMap/DesignElementMap.pm
Bio::MAGE::BioAssayData::DesignElementMapping
in BioAssayData/DesignElementMapping/DesignElementMapping.pm
Bio::MAGE::BioAssayData::FeatureDimension
in BioAssayData/FeatureDimension/FeatureDimension.pm
Bio::MAGE::BioAssayData::MeasuredBioAssayData
in BioAssayData/MeasuredBioAssayData/MeasuredBioAssayData.pm
Bio::MAGE::BioAssayData::QuantitationTypeDimension
in BioAssayData/QuantitationTypeDimension/QuantitationTypeDimension.pm
Bio::MAGE::BioAssayData::QuantitationTypeMap
in BioAssayData/QuantitationTypeMap/QuantitationTypeMap.pm
Bio::MAGE::BioAssayData::QuantitationTypeMapping
in BioAssayData/QuantitationTypeMapping/QuantitationTypeMapping.pm
Bio::MAGE::BioAssayData::ReporterDimension
in BioAssayData/ReporterDimension/ReporterDimension.pm
Bio::MAGE::BioAssayData::Transformation
in BioAssayData/Transformation/Transformation.pm
Bio::MAGE::BioEvent::BioEvent
in BioEvent/BioEvent/BioEvent.pm
Bio::MAGE::BioEvent::Map
in BioEvent/Map/Map.pm
Bio::MAGE::BioMaterial::BioMaterial
in BioMaterial/BioMaterial/BioMaterial.pm
Bio::MAGE::BioMaterial::BioMaterialMeasurement
in BioMaterial/BioMaterialMeasurement/BioMaterialMeasurement.pm
Bio::MAGE::BioMaterial::BioSample
in BioMaterial/BioSample/BioSample.pm
Bio::MAGE::BioMaterial::BioSource
in BioMaterial/BioSource/BioSource.pm
Bio::MAGE::BioMaterial::Compound
in BioMaterial/Compound/Compound.pm
Bio::MAGE::BioMaterial::CompoundMeasurement
in BioMaterial/CompoundMeasurement/CompoundMeasurement.pm
Bio::MAGE::BioMaterial::LabeledExtract
in BioMaterial/LabeledExtract/LabeledExtract.pm
Bio::MAGE::BioMaterial::Treatment
in BioMaterial/Treatment/Treatment.pm
Bio::MAGE::BioSequence::BioSequence
in BioSequence/BioSequence/BioSequence.pm
Bio::MAGE::BioSequence::SeqFeature
in BioSequence/SeqFeature/SeqFeature.pm
Bio::MAGE::BioSequence::SeqFeatureLocation
in BioSequence/SeqFeatureLocation/SeqFeatureLocation.pm
Bio::MAGE::BioSequence::SequencePosition
in BioSequence/SequencePosition/SequencePosition.pm
Bio::MAGE::ContentHandler
in XMLUtils/XMLUtils.pm
Bio::MAGE::Describable
in Describable/Describable.pm
Bio::MAGE::Description::Database
in Description/Database/Database.pm
Bio::MAGE::Description::DatabaseEntry
in Description/DatabaseEntry/DatabaseEntry.pm
Bio::MAGE::Description::Description
in Description/Description/Description.pm
Bio::MAGE::Description::ExternalReference
in Description/ExternalReference/ExternalReference.pm
Bio::MAGE::Description::OntologyEntry
in Description/OntologyEntry/OntologyEntry.pm
Bio::MAGE::DesignElement::CompositeCompositeMap
in DesignElement/CompositeCompositeMap/CompositeCompositeMap.pm
Bio::MAGE::DesignElement::CompositePosition
in DesignElement/CompositePosition/CompositePosition.pm
Bio::MAGE::DesignElement::CompositeSequence
in DesignElement/CompositeSequence/CompositeSequence.pm
Bio::MAGE::DesignElement::DesignElement
in DesignElement/DesignElement/DesignElement.pm
Bio::MAGE::DesignElement::Feature
in DesignElement/Feature/Feature.pm
Bio::MAGE::DesignElement::FeatureInformation
in DesignElement/FeatureInformation/FeatureInformation.pm
Bio::MAGE::DesignElement::FeatureLocation
in DesignElement/FeatureLocation/FeatureLocation.pm
Bio::MAGE::DesignElement::FeatureReporterMap
in DesignElement/FeatureReporterMap/FeatureReporterMap.pm
Bio::MAGE::DesignElement::MismatchInformation
in DesignElement/MismatchInformation/MismatchInformation.pm
Bio::MAGE::DesignElement::Position
in DesignElement/Position/Position.pm
Bio::MAGE::DesignElement::Reporter
in DesignElement/Reporter/Reporter.pm
Bio::MAGE::DesignElement::ReporterCompositeMap
in DesignElement/ReporterCompositeMap/ReporterCompositeMap.pm
Bio::MAGE::DesignElement::ReporterPosition
in DesignElement/ReporterPosition/ReporterPosition.pm
Bio::MAGE::DocumentHandler
in XMLUtils/XMLUtils.pm
Bio::MAGE::Experiment::Experiment
in Experiment/Experiment/Experiment.pm
Bio::MAGE::Experiment::ExperimentDesign
in Experiment/ExperimentDesign/ExperimentDesign.pm
Bio::MAGE::Experiment::ExperimentalFactor
in Experiment/ExperimentalFactor/ExperimentalFactor.pm
Bio::MAGE::Experiment::FactorValue
in Experiment/FactorValue/FactorValue.pm
Bio::MAGE::Extendable
in Extendable/Extendable.pm
Bio::MAGE::Handler
in XMLUtils/XMLUtils.pm
Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster
in HigherLevelAnalysis/BioAssayDataCluster/BioAssayDataCluster.pm
Bio::MAGE::HigherLevelAnalysis::Node
in HigherLevelAnalysis/Node/Node.pm
Bio::MAGE::HigherLevelAnalysis::NodeContents
in HigherLevelAnalysis/NodeContents/NodeContents.pm
Bio::MAGE::HigherLevelAnalysis::NodeValue
in HigherLevelAnalysis/NodeValue/NodeValue.pm
Bio::MAGE::Identifiable
in Identifiable/Identifiable.pm
Bio::MAGE::Measurement::ConcentrationUnit
in Measurement/ConcentrationUnit/ConcentrationUnit.pm
Bio::MAGE::Measurement::DistanceUnit
in Measurement/DistanceUnit/DistanceUnit.pm
Bio::MAGE::Measurement::MassUnit
in Measurement/MassUnit/MassUnit.pm
Bio::MAGE::Measurement::Measurement
in Measurement/Measurement/Measurement.pm
Bio::MAGE::Measurement::QuantityUnit
in Measurement/QuantityUnit/QuantityUnit.pm
Bio::MAGE::Measurement::TemperatureUnit
in Measurement/TemperatureUnit/TemperatureUnit.pm
Bio::MAGE::Measurement::TimeUnit
in Measurement/TimeUnit/TimeUnit.pm
Bio::MAGE::Measurement::Unit
in Measurement/Unit/Unit.pm
Bio::MAGE::Measurement::VolumeUnit
in Measurement/VolumeUnit/VolumeUnit.pm
Bio::MAGE::NameValueType
in NameValueType/NameValueType.pm
Bio::MAGE::Protocol::Hardware
in Protocol/Hardware/Hardware.pm
Bio::MAGE::Protocol::HardwareApplication
in Protocol/HardwareApplication/HardwareApplication.pm
Bio::MAGE::Protocol::Parameter
in Protocol/Parameter/Parameter.pm
Bio::MAGE::Protocol::ParameterValue
in Protocol/ParameterValue/ParameterValue.pm
Bio::MAGE::Protocol::Parameterizable
in Protocol/Parameterizable/Parameterizable.pm
Bio::MAGE::Protocol::ParameterizableApplication
in Protocol/ParameterizableApplication/ParameterizableApplication.pm
Bio::MAGE::Protocol::Protocol
in Protocol/Protocol/Protocol.pm
Bio::MAGE::Protocol::ProtocolApplication
in Protocol/ProtocolApplication/ProtocolApplication.pm
Bio::MAGE::Protocol::Software
in Protocol/Software/Software.pm
Bio::MAGE::Protocol::SoftwareApplication
in Protocol/SoftwareApplication/SoftwareApplication.pm
Bio::MAGE::QuantitationType::ConfidenceIndicator
in QuantitationType/ConfidenceIndicator/ConfidenceIndicator.pm
Bio::MAGE::QuantitationType::DerivedSignal
in QuantitationType/DerivedSignal/DerivedSignal.pm
Bio::MAGE::QuantitationType::Error
in QuantitationType/Error/Error.pm
Bio::MAGE::QuantitationType::ExpectedValue
in QuantitationType/ExpectedValue/ExpectedValue.pm
Bio::MAGE::QuantitationType::Failed
in QuantitationType/Failed/Failed.pm
Bio::MAGE::QuantitationType::MeasuredSignal
in QuantitationType/MeasuredSignal/MeasuredSignal.pm
Bio::MAGE::QuantitationType::PValue
in QuantitationType/PValue/PValue.pm
Bio::MAGE::QuantitationType::PresentAbsent
in QuantitationType/PresentAbsent/PresentAbsent.pm
Bio::MAGE::QuantitationType::QuantitationType
in QuantitationType/QuantitationType/QuantitationType.pm
Bio::MAGE::QuantitationType::Ratio
in QuantitationType/Ratio/Ratio.pm
Bio::MAGE::QuantitationType::SpecializedQuantitationType
in QuantitationType/SpecializedQuantitationType/SpecializedQuantitationType.pm
Bio::MAGE::QuantitationType::StandardQuantitationType
in QuantitationType/StandardQuantitationType/StandardQuantitationType.pm
Bio::MAGE::XMLReader
in XMLUtils/XMLUtils.pm

Other files