NAME

CracTools::Config - Manage and access CracTools configuration file

VERSION

version 1.251

SYNOPSIS

  use CracTools::Config;

  # Open the configuration file
  CracTools::Config::LoadConfig($config_file);

  # Retrieve some variable
  $gff_file = CracTools::Config::getConfVar('ANNOTATION_GFF');

DESCRIPTION

This module aims to integrate a common configuration file among all the cractools pipelines. It automatically load the configuration file by looking to diverse locations, then it provides methods to retrieved the variables declared in the configuration file.

The configuration file name is CracTools.cfg, and the space search is the current director, the home dir, local configurations (/usr/loacl/etc) and default configurations (/etc/).

SEE ALSO

This module is based on Config::FileManager.

PrintVersion

  Example     : CracTools::Config::PrintVersion();
  Description : Print (in an uniformized way) the version information of the CracTool script.
  ReturnType  : undef

LoadConfig

  Example     : my $default_cfg = LoadConfig(); # Use (and get) default config file (see L<Config::FileManager>)
                LoadConfig("your_file.conf");
  Description : Load the default configuration file.
  ReturnType  : undef

getConfVar

  Arg [1] : String - variable name

  Example     : my $var = getConfVar("GENOME"); 
  Description : Return the variable value found in the
                configuration file
  ReturnType  : String

AUTHORS

• Nicolas PHILIPPE <nphilippe.research@gmail.com>

• Jérôme AUDOUX <jaudoux@cpan.org>

• Sacha BEAUMEUNIER <sacha.beaumeunier@gmail.com>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2017 by IRMB/INSERM (Institute for Regenerative Medecine and Biotherapy / Institut National de la Santé et de la Recherche Médicale) and AxLR/SATT (Lanquedoc Roussilon / Societe d'Acceleration de Transfert de Technologie).

This is free software, licensed under:

  The GNU Affero General Public License, Version 3, November 2007