Bio-Das

Modules

Bio::Das

Interface to Distributed Annotation System

Bio::Das::DSN

Object encapsulation of a DAS data source

Bio::Das::Feature

A genomic annotation

Bio::Das::FeatureIterator

Iterate over a set of Bio::Das::Features

Bio::Das::HTTP::Fetch

Manage the HTTP protocol for DAS transactions

Bio::Das::Map

Resolve map coordinates

Bio::Das::Request

Base class for a request on a DAS server

Bio::Das::Request::Dnas

The DAS "dna" request

Bio::Das::Request::Dsn

The DAS "dsn" request

Bio::Das::Request::Entry_points

The DAS "entry_points" request

Bio::Das::Request::Feature2Segments

Translate feature names into segments

Bio::Das::Request::Stylesheet

The DAS "stylesheet" request

Bio::Das::Request::Types

The DAS "types" request

Bio::Das::Segment

Serial access to Bio::Das sequence "segments"

Bio::Das::Stylesheet

Access to DAS stylesheets

Bio::Das::Type

A sequence annotation type

Bio::Das::TypeHandler

Utilities for handling types

Bio::Das::Util

Das Utilities

Provides

Bio::Das::AGPServer::Config

in Das/AGPServer/Config.pm

Bio::Das::AGPServer::Daemon

in Das/AGPServer/Daemon.pm

Bio::Das::AGPServer::Parser

in Das/AGPServer/Parser.pm

Bio::Das::AGPServer::SQLStorage

in Das/AGPServer/SQLStorage.pm

Bio::Das::AGPServer::SQLStorage::CSV::DB

in Das/AGPServer/SQLStorage/CSV/DB.pm

Bio::Das::AGPServer::SQLStorage::MySQL::DB

in Das/AGPServer/SQLStorage/MySQL/DB.pm

Bio::Das::ProServer::Config

in Das/ProServer/Config.pm

Bio::Das::ProServer::Daemon

in Das/ProServer/Daemon.pm

Bio::Das::ProServer::Loader::agp

in Das/ProServer/Loader/agp.pm

Bio::Das::ProServer::SourceAdaptor

in Das/ProServer/SourceAdaptor.pm

Bio::Das::ProServer::SourceAdaptor::Transport::bioseqio

in Das/ProServer/SourceAdaptor/Transport/bioseqio.pm

Bio::Das::ProServer::SourceAdaptor::Transport::dbi

in Das/ProServer/SourceAdaptor/Transport/dbi.pm

Bio::Das::ProServer::SourceAdaptor::Transport::file

in Das/ProServer/SourceAdaptor/Transport/file.pm

Bio::Das::ProServer::SourceAdaptor::Transport::generic

in Das/ProServer/SourceAdaptor/Transport/generic.pm

Bio::Das::ProServer::SourceAdaptor::Transport::getz

in Das/ProServer/SourceAdaptor/Transport/getz.pm

Bio::Das::ProServer::SourceAdaptor::Transport::getzc

in Das/ProServer/SourceAdaptor/Transport/getzc.pm

Bio::Das::ProServer::SourceAdaptor::Transport::oracle

in Das/ProServer/SourceAdaptor/Transport/oracle.pm

Bio::Das::ProServer::SourceAdaptor::Transport::wgetz

in Das/ProServer/SourceAdaptor/Transport/wgetz.pm

Bio::Das::ProServer::SourceAdaptor::agp

in Das/ProServer/SourceAdaptor/agp.pm

Bio::Das::ProServer::SourceAdaptor::bioseq

in Das/ProServer/SourceAdaptor/bioseq.pm

Bio::Das::ProServer::SourceAdaptor::cosmic

in Das/ProServer/SourceAdaptor/cosmic.pm

Bio::Das::ProServer::SourceAdaptor::gensat

in Das/ProServer/SourceAdaptor/gensat.pm

Bio::Das::ProServer::SourceAdaptor::haplotype

in Das/ProServer/SourceAdaptor/haplotype.pm

Bio::Das::ProServer::SourceAdaptor::image

in Das/ProServer/SourceAdaptor/image.pm

Bio::Das::ProServer::SourceAdaptor::interpro

in Das/ProServer/SourceAdaptor/interpro.pm

Bio::Das::ProServer::SourceAdaptor::simple

in Das/ProServer/SourceAdaptor/simple.pm

Bio::Das::ProServer::SourceAdaptor::snp

in Das/ProServer/SourceAdaptor/snp.pm

Bio::Das::ProServer::SourceAdaptor::sts

in Das/ProServer/SourceAdaptor/sts.pm

Bio::Das::ProServer::SourceAdaptor::swissprot

in Das/ProServer/SourceAdaptor/swissprot.pm

Bio::Das::ProServer::SourceAdaptor::trace

in Das/ProServer/SourceAdaptor/trace.pm

Bio::Das::Request::Features

in Das/Request/Features.pm

Examples

Other files

To install Bio::Das, copy and paste the appropriate command in to your terminal.

cpanm

cpanm Bio::Das

CPAN shell

perl -MCPAN -e shell
install Bio::Das

For more information on module installation, please visit the detailed CPAN module installation guide.

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Modules

Provides

Examples

Other files

Module Install Instructions