BS_ChromosomeDiff.pl
Version 1.01
This utility takes two versions of a chromosome and lists the differences between them. It will take note of added or deleted features, the addition or loss of subfeatures, changes in ORF translation, changes in feature sequence, and changes in annotation.
Required arguments:
-F --FIRST : the 'original' chromosome -S --SECOND : the 'variant' chromosome
Optional arguments:
-PT, --PTRANSLATION : check ORF translations -PA, --PALIGN : make alignments for features with translation differences -NS, --NSEQUENCE : check nucleotide sequence differences -NA, --NALIGN : make alignments for features with nucleotide changes -G, --GROUP : sort results by 'feature' (default) or by change 'type' -O, --OUTPUT : html or defaults to txt -h, --help : Display this message
To install Bio::BioStudio, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::BioStudio
CPAN shell
perl -MCPAN -e shell install Bio::BioStudio
For more information on module installation, please visit the detailed CPAN module installation guide.