NAME
Bio::GeneDesign::RestrictionEnzyme
VERSION
Version 3.05
DESCRIPTION
GeneDesign object that represents a restriction enzyme
AUTHOR
Sarah Richardson <notadoctor@jhu.edu>
CONSTRUCTOR METHODS
new
Title : new
Function:
Returns : a new Bio::GeneDesign::RestrictionEnzyme object
Args :USEFUL METHODS
clone
siteseeker()
Generates a hash describing the positions of a particular enzyme's recognition
sites in a nucleotide sequence.
in: nucleotide sequence as a string
out: reference to a hash where the keys are positions and the value is the
recognition site from that position as a string.display
ACCESSOR METHODS
id
vendorlist
star
score
length
methcpg
methdcm
methdam
buffers
vendors
tempin
temp
recseq
cutseq
regex
class
type
onebpoverhang
exclude
palindromy
staract
start
COPYRIGHT AND LICENSE
Copyright (c) 2011, GeneDesign developers All rights reserved.
Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. * Neither the name of the Johns Hopkins nor the names of the developers may be used to endorse or promote products derived from this software without specific prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE DEVELOPERS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.