Bio::BLAST::Database::Seq - lazy-loading sequence from a BLAST database
Implements all methods in Bio::PrimarySeqI. Lazily loads its sequence information from the BLAST database it comes from, meaning that the sequence information is not actually loaded until you ask for it. Uses Bio::Seq::LargePrimarySeq internally when sequences are large, so can handle arbitrarily large sequences relatively well.
For use by Bio::BLAST::Database only.
Takes args -id and -bdb, which are the sequence's ID and the Bio::BLAST::Database object it's from, respectively.
Return a non-lazy Bio::PrimarySeqI-implementing object containing the entire sequence. Most developers should not need this.
Read-only. Return this sequence's identifier.
Read only, return the description line, if any, for this sequence.
Bio::PrimarySeqI
Robert Buels <rmb32@cornell.edu>
This software is copyright (c) 2011 by Robert Buels.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.
To install Bio::BLAST::Database, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::BLAST::Database
CPAN shell
perl -MCPAN -e shell install Bio::BLAST::Database
For more information on module installation, please visit the detailed CPAN module installation guide.