NAME

Bio::Chado::Schema::Phenotype::Phenotype - A phenotypic statement, or a single atomic phenotypic observation, is a controlled sentence describing observable effects of non-wild type function. E.g. Obs=eye, attribute=color, cvalue=red.

ACCESSORS

phenotype_id

  data_type: integer
  default_value: nextval('phenotype_phenotype_id_seq'::regclass)
  is_auto_increment: 1
  is_nullable: 0
  size: 4

uniquename

  data_type: text
  default_value: undef
  is_nullable: 0
  size: undef

observable_id

  data_type: integer
  default_value: undef
  is_foreign_key: 1
  is_nullable: 1
  size: 4

The entity: e.g. anatomy_part, biological_process.

attr_id

  data_type: integer
  default_value: undef
  is_foreign_key: 1
  is_nullable: 1
  size: 4

Phenotypic attribute (quality, property, attribute, character) - drawn from PATO.

value

  data_type: text
  default_value: undef
  is_nullable: 1
  size: undef

Value of attribute - unconstrained free text. Used only if cvalue_id is not appropriate.

cvalue_id

  data_type: integer
  default_value: undef
  is_foreign_key: 1
  is_nullable: 1
  size: 4

Phenotype attribute value (state).

assay_id

  data_type: integer
  default_value: undef
  is_foreign_key: 1
  is_nullable: 1
  size: 4

Evidence type.

RELATIONS

feature_phenotypes

Type: has_many

Related object: Bio::Chado::Schema::Phenotype::FeaturePhenotype

assay

Type: belongs_to

Related object: Bio::Chado::Schema::Cv::Cvterm

attr

Type: belongs_to

Related object: Bio::Chado::Schema::Cv::Cvterm

observable

Type: belongs_to

Related object: Bio::Chado::Schema::Cv::Cvterm

cvalue

Type: belongs_to

Related object: Bio::Chado::Schema::Cv::Cvterm

phenotype_comparison_phenotype1_ids

Type: has_many

Related object: Bio::Chado::Schema::Genetic::PhenotypeComparison

phenotype_comparison_phenotype2_ids

Type: has_many

Related object: Bio::Chado::Schema::Genetic::PhenotypeComparison

phenotype_cvterms

Type: has_many

Related object: Bio::Chado::Schema::Phenotype::PhenotypeCvterm

phenstatements

Type: has_many

Related object: Bio::Chado::Schema::Genetic::Phenstatement

cpanm Bio::Chado::Schema

perl -MCPAN -e shell
install Bio::Chado::Schema