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Changes for version 0.8 - 2012-03-20

  • bugfix to handling of windows line-endings: parsers now remove them regardless of the platform on which we are running.
  • add gff3_parse_directive function to Bio::GFF3::LowLevel

Documentation

make GFF3 from fasta sequences
efficiently insert sync (###) directives into GFF3, printing to stdout

Modules

fast, low-level functions for parsing and formatting GFF3
a fast, low-level gff3 parser
make gff3 for the sequences in a fasta file
insert sync (###) directives into an existing GFF3 file.