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Changes for version 1.6 - 2013-07-26

  • Improved the error message for when references between features cannot be resolved. Instead of just Data::Dumper-ing the data structure, prints a formatted report of which references could not be resolved.

Documentation

make GFF3 from fasta sequences

Modules

fast, low-level functions for parsing and formatting GFF3
a fast, low-level gff3 parser
compatibility layer to support Bio::GFF3::LowLevel::Parser 1.0 API
make gff3 for the sequences in a fasta file