Bio-GFF3

Changes for version 1.8 - 2013-10-28

Fixed a bug in which feature lines with no ID, Parent, or Derives_from attributes were being returned as a bare hashref instead of a single-element arrayref as they should be.

Documentation

gff3_from_fasta

make GFF3 from fasta sequences

gff3_insert_sync_directives

efficiently insert sync (###) directives into GFF3, printing to stdout

Modules

Bio::GFF3::LowLevel

fast, low-level functions for parsing and formatting GFF3

Bio::GFF3::LowLevel::Parser

a fast, low-level gff3 parser

Bio::GFF3::LowLevel::Parser::1_0_backcompat

compatibility layer to support Bio::GFF3::LowLevel::Parser 1.0 API

Bio::GFF3::Transform::FromFasta

make gff3 for the sequences in a fasta file

Bio::GFF3::Transform::SyncDirectives

insert sync (###) directives into an existing GFF3 file. WARNING: this module does not really work in the general case, read the DESCRIPTION section below.

Other files

To install Bio::GFF3::LowLevel, copy and paste the appropriate command in to your terminal.

cpanm

cpanm Bio::GFF3::LowLevel

CPAN shell

perl -MCPAN -e shell
install Bio::GFF3::LowLevel

For more information on module installation, please visit the detailed CPAN module installation guide.

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Changes for version 1.8 - 2013-10-28

Documentation

Modules

Other files

Module Install Instructions