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Bio-NEXUS-0.66
River stage one • 1 direct dependent • 1 total dependent
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Documentation

Bio::NEXUS
doc::Tutorial
align2nex.pl
translate an alignment into NEXUS format using BioPerl
nex2text_tree.pl
Trees as strings
nexplot.pl
PostScript plot of tree + data table (from NEXUS infile)
nextool
NEXUS file manipulation tool

Modules

Bio::NEXUS
A class representing a NEXUS object, which can be created from and written to a NEXUS file
Bio::NEXUS::AssumptionsBlock
parses and reads in the assumptions block of a NEXUS file
Bio::NEXUS::Block
Bio::NEXUS::CharactersBlock
represents a Characters Block (Data or Characters) of a NEXUS file
Bio::NEXUS::CodonBlock
Bio::NEXUS::DataBlock
Bio::NEXUS::DistancesBlock
Bio::NEXUS::Functions
Bio::NEXUS::HistoryBlock
represents a history block of a NEXUS file
Bio::NEXUS::MatrixBlock
Bio::NEXUS::Node
provides a few functions for nodes
Bio::NEXUS::NotesBlock
Bio::NEXUS::SetsBlock
parses and reads NEXUS Sets block
Bio::NEXUS::SpanBlock
Bio::NEXUS::TaxUnit
Bio::NEXUS::TaxUnitSet
Bio::NEXUS::TaxaBlock
parses and reads in the taxa block of a NEXUS file
Bio::NEXUS::Tree
provides a few functions for trees
Bio::NEXUS::TreesBlock
parses and reads in the trees block of a NEXUS file
Bio::NEXUS::UnalignedBlock
represents an unaligned block of a NEXUS file
Bio::NEXUS::UnknownBlock
simple block object for storing information about a block not recognized by the NEXUS package.
Bio::NEXUS::WeightSet

Other files