Webservice::InterMine::Cookbook - how to run Webservice::InterMine webservice queries
The Webservice::InterMine cookbook is a set of short tutorial 'recipes' which aim to demonstrate particular features of the Webservice::InterMine Perl API. Each recipe presents some code, followed by a section which explains and discusses the features used.
The bare minimum you need to create and run a valid Webservice::InterMine query from scratch
Queries without constraints are not very useful, so here we look at how to add some simple constraints to your searches
There are several different constraint types, distinguished by their operators; this recipe introduces all the main constraint types.
This recipe presents the other potential features of a query: joins and path descriptions
Once you have your query working the way you want it to, you will then need to deal with the results it returns - this recipe introduces the different result formats and how to access your data
This recipe looks at using iteration, and ways that you can use features such as filtering results, limiting them, and processing them in a stream.
The Perl API is written to be easily extensible with Moose roles - so if there is something you wish it could do, it probably can: here we look at adding different output formats to queries.
You don't have to create all your own queries - much of the work has been done for you with re-usable 'Templates' available from the webservice - here we look at the basics of calling a template
Your scripted queries can be saved to the web-service as templates, making them as portable as the web-service itself, and as powerful as any other template.
You can create new lists on the server from collections of identifiers or queries that define a specific result set.
You can perform statistical analysis of lists available to you.
You can combine lists in various ways, via common set operations.
Alex Kalderimis firstname.lastname@example.org
Please report any bugs or feature requests to email@example.com.
You can find documentation for this module with the perldoc command.
You can also look for information at:
Copyright 2006 - 2010 FlyMine, all rights reserved.
This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
To install Webservice::InterMine, copy and paste the appropriate command in to your terminal.
perl -MCPAN -e shell
For more information on module installation, please visit the detailed CPAN module installation guide.