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NAME

CLIPSeqTools::PreprocessApp::trim_fastq - Trim N nucleotides from the start and/or end of FASTQ sequences.

SYNOPSIS

clipseqtools-preprocess trim_fastq [options/parameters]

DESCRIPTION

Trim the sequences in a fastq file. Removes N nucleotides from the start and/or end of each sequence.

OPTIONS

Input.
--fastq <Str> FASTQ file with reads.
--N_from_start <Int> Number of nucleotides to trim from the start of
each sequence. [Default: 0]
--N_from_end <Int> Number of nucleotides to trim from the end of
each sequence. [Default: 0]
Output
--o_prefix <Str> output path prefix. Script will create and add
extension to path. [Default: ./]
Other options.
-v --verbose print progress lines and extra information.
-h -? --usage --help print help message