NAME

Bio::Chado::Schema::Result::Stock::StockCvterm

DESCRIPTION

stock_cvterm links a stock to cvterms. This is for secondary cvterms; primary cvterms should use stock.type_id.

ACCESSORS

stock_cvterm_id

            

              
              
data_type: 'integer'
is_auto_increment: 1
is_nullable: 0
sequence: 'stock_cvterm_stock_cvterm_id_seq'
            
          

stock_id

            

              
              
data_type: 'integer'
is_foreign_key: 1
is_nullable: 0
            
          

cvterm_id

            

              
              
data_type: 'integer'
is_foreign_key: 1
is_nullable: 0
            
          

pub_id

            

              
              
data_type: 'integer'
is_foreign_key: 1
is_nullable: 0
            
          

is_not

            

              
              
data_type: 'boolean'
default_value: false
is_nullable: 0
            
          

rank

            

              
              
data_type: 'integer'
default_value: 0
is_nullable: 0
            
          

RELATIONS

cvterm

Type: belongs_to

Related object: Bio::Chado::Schema::Result::Cv::Cvterm

pub

Type: belongs_to

Related object: Bio::Chado::Schema::Result::Pub::Pub

stock

Type: belongs_to

Related object: Bio::Chado::Schema::Result::Stock::Stock

stock_cvtermprops

Type: has_many

Related object: Bio::Chado::Schema::Result::Stock::StockCvtermprop

create_stock_cvtermprops

            

              
              
Usage: $set->create_stock_cvtermprops({ baz => 2, foo => 'bar' });
Desc : convenience method to create stock_cvterm properties using cvterms
        from the ontology with the given name
Args : hashref of { propname => value, ...},
       options hashref as:
        {
          autocreate => 0,
             (optional) boolean, if passed, automatically create cv,
             cvterm, and dbxref rows if one cannot be found for the
             given stock_cvtermprop name.  Default false.
          cv_name => cv.name to use for the given stock_cvtermprops.
                     Defaults to 'stock_cvterm_property',
          db_name => db.name to use for autocreated dbxrefs,
                     default 'null',
          dbxref_accession_prefix => optional, default
                                     'autocreated:',
          definitions => optional hashref of:
              { cvterm_name => definition,
              }
           to load into the cvterm table when autocreating cvterms
           rank => force numeric rank. Be careful not to pass ranks that already exist
                   for the property type. The function will die in such case.
           allow_duplicate_values => default false.
              If true, allow duplicate instances of the same stock_cvterm
              and value in the properties of the stock_cvterm.  Duplicate
              values will have different ranks.
        }
Ret  : hashref of { propname => new stock_cvtermprop object }
            
          

cpanm Bio::Chado::Schema

perl -MCPAN -e shell
install Bio::Chado::Schema