-
-
06 Jul 2012 19:06:31 UTC
- Browse (raw)
- Changes
- Homepage
- How to Contribute
- Repository (git clone)
- Issues (1)
- Testers (438 / 0 / 0)
- Kwalitee
Bus factor: 0- % Coverage
- License: perl_5
- Activity
24 month- Tools
- Download (203.33KB)
- MetaCPAN Explorer
- Permissions
- Subscribe to distribution
- Permalinks
- This version
- Latest version
Changes for version 0.20000 - 2012-07-06
- added Bio::Chado::NaturalDiversity::Reports, which has some canned reporting functions for working with natural diversity data (nmenda)
- added greate_genotypeprops to Genetic::Genotype (nmenda)
- added stock_phenotypes_rs, recursive_phenotypes_rs, stock_genotypes_rs, and stock_project_phenotypes to Stock::Stock (nmenda)
Documentation
For describing cell linesAugments sequence module with descriptions of computational analyses and features resulting from those analysesA collection of bridge codes that have multiple dependancies so they don't happily go where is most obviousmodel persons, institutes, groups, organizations, etcControlled vocabularies and ontologiestranscript or protein expression dataGeneral purpose tables, including dbxrefsGenotypes and mutant allelesFor describing molecular librariesAlternative expression module, based on MAGE modelNon-sequence maps: genetic, radiation hybrid, cytogenetic, etcNatural diversity module for dealing with populations, samples, genotypes, phenotypes and results of other assays.Species data - does not include phylogenyEntity-attribute-value phenotypic character descriptionsFor representing phylogenetic trees; the trees represent the phylogeny of some some kind of sequence feature (mainly proteins) or actual organism taxonomy treesThe project table has been moved from general to its own module and has been expanded to provide properties, publications and contacts.Bibliographic data on publicationsSequence and sequence features, their localization and propertiesFor tracking stock collectionsdeveloper-only maintenance script to sync this DBIx::Class object layer with the latest upstream version of ChadoModules
A standard DBIx::Class layer for the Chado database schema.featurelocs do not meet. symmetricModel persons, institutes, groups, organizations, etc.Model relationships between contactsper-cv terms counts (excludes obsoletes)per-cv terms counts (includes obsoletes)The expression table is essentially a bridge table.per-db dbxref countsThe environmental component of a phenotype description.Parameters associated with image acquisition.Link assays to projects.Extra assay properties that are not accounted for in assay.Procedural notes on how data was prepared and processed.Cross-reference experiment to accessions, images, etcLinking table: experiments to the protocols they involve.Linking nd_experiment(s) to publication(s)Cross-reference experiment_stock to accessions, images, etcProperty/value associations for protocol.Tag-value properties - follows standard chado model.Global anchor for phylogenetic tree.Standard Chado flexible property table for projects.Linking table for associating projects and contacts.Linking table for associating projects and publications.Property or attribute of a feature_pub link.Provenance for feature_relationshipprop.Linking table between feature and synonym.per-feature-type feature countsLibrary to be used by Bio::Chado::Schema test scripts.utility functions shared by Bio::Chado::Schema objectsProvides
in lib/Bio/Chado/Schema/Result/Cv/Cvterm.pmin lib/Bio/Chado/Schema/Result/Sequence/Cvtermsynonym.pmin lib/Bio/Chado/Schema/Result/Stock/Stock.pmModule Install Instructions
To install Bio::Chado::Schema, copy and paste the appropriate command in to your terminal.
cpanm Bio::Chado::Schema
perl -MCPAN -e shell install Bio::Chado::Schema
For more information on module installation, please visit the detailed CPAN module installation guide.