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Lincoln D. Stein

NAME

Bio::DB::Bam::PileupWrapper -- Add high-level methods to Bio::DB::Bam::Pileup

SYNOPSIS

See "The generic fetch() and pileup() methods" in Bio::DB::Sam for usage of the pileup() method.

DESCRIPTION

See Bio::DB::Bam::Pileup for documentation of this object's methods. This class is used by the high-level API to return Bio::DB::Bam::AlignWrapper objects from the call to alignment() rather than Bio::DB::Bam::Alignment.

SEE ALSO

Bio::Perl, Bio::DB::Sam, Bio::DB::Bam::Constants

AUTHOR

Lincoln Stein <lincoln.stein@oicr.on.ca>. <lincoln.stein@bmail.com>

Copyright (c) 2009 Ontario Institute for Cancer Research.

This package and its accompanying libraries is free software; you can redistribute it and/or modify it under the terms of the GPL (either version 1, or at your option, any later version) or the Artistic License 2.0. Refer to LICENSE for the full license text. In addition, please see DISCLAIMER.txt for disclaimers of warranty.