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Bio-DB-GFF-1.7.4
River stage one • 2 direct dependents • 2 total dependents
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 / Bio::DB::GFF::Aggregator::ucsc_acembly

NAME

Bio::DB::GFF::Aggregator::ucsc_acembly -- UCSC acembly aggregator

SYNOPSIS

  use Bio::DB::GFF;

  # Open the sequence database
  my $db      = Bio::DB::GFF->new( -adaptor => 'dbi:mysql',
                                   -dsn     => 'dbi:mysql:elegans42',
                                   -aggregator => ['transcript','clone'],
                                 );

 -------------------------------------------------
 Aggregator method: transcript
 Main method:       transcript
 Sub methods:       exon CDS 5'UTR 3'UTR TSS PolyA
 -------------------------------------------------

DESCRIPTION

Bio::DB::GFF::Aggregator::transcript

method

 Title   : method
 Usage   : $aggregator->method
 Function: return the method for the composite object
 Returns : the string "acembly"
 Args    : none
 Status  : Public

part_names

 Title   : part_names
 Usage   : $aggregator->part_names
 Function: return the methods for the sub-parts
 Returns : empty list
 Args    : none
 Status  : Public

main_name

 Title   : main_name
 Usage   : $aggregator->main_name
 Function: return the method for the main component
 Returns : the string "transcript:acembly"
 Args    : none
 Status  : Public

BUGS

None reported.

SEE ALSO

Bio::DB::GFF, Bio::DB::GFF::Aggregator

AUTHOR

Allen Day <allenday@ucla.edu>.

Copyright (c) 2002 Allen Day, University of California, Los Angeles.

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.