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08 Jan 2020 20:41:58 UTC
- Distribution: Bio-DB-GFF
- Module version: 1.7.4
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Bus factor: 2- License: perl_5
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- Dependencies
- Apache::DBI
- Bio::Annotation::Collection
- Bio::DB::BioFetch
- Bio::DB::Fasta
- Bio::DB::GFF::Util::Binning
- Bio::DB::GFF::Util::Rearrange
- Bio::Das::FeatureTypeI
- Bio::Das::SegmentI
- Bio::DasI
- Bio::Location::Simple
- Bio::Location::Split
- Bio::LocationI
- Bio::PrimarySeq
- Bio::RangeI
- Bio::Root::Root
- Bio::Root::RootI
- Bio::Root::Version
- Bio::SeqFeatureI
- Bio::SeqI
- Bio::SeqIO
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- DBI
- DB_File
- Data::Dumper
- Digest::MD5
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NAME
Bio::DB::GFF::Aggregator::ucsc_acembly -- UCSC acembly aggregator
SYNOPSIS
use Bio::DB::GFF; # Open the sequence database my $db = Bio::DB::GFF->new( -adaptor => 'dbi:mysql', -dsn => 'dbi:mysql:elegans42', -aggregator => ['transcript','clone'], ); ------------------------------------------------- Aggregator method: transcript Main method: transcript Sub methods: exon CDS 5'UTR 3'UTR TSS PolyA -------------------------------------------------
DESCRIPTION
Bio::DB::GFF::Aggregator::transcript
method
Title : method Usage : $aggregator->method Function: return the method for the composite object Returns : the string "acembly" Args : none Status : Public
part_names
Title : part_names Usage : $aggregator->part_names Function: return the methods for the sub-parts Returns : empty list Args : none Status : Public
main_name
Title : main_name Usage : $aggregator->main_name Function: return the method for the main component Returns : the string "transcript:acembly" Args : none Status : Public
BUGS
None reported.
SEE ALSO
Bio::DB::GFF, Bio::DB::GFF::Aggregator
AUTHOR
Allen Day <allenday@ucla.edu>.
Copyright (c) 2002 Allen Day, University of California, Los Angeles.
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
Module Install Instructions
To install Bio::DB::GFF, copy and paste the appropriate command in to your terminal.
cpanm Bio::DB::GFF
perl -MCPAN -e shell install Bio::DB::GFF
For more information on module installation, please visit the detailed CPAN module installation guide.