Christopher Fields
and 1 contributors

NAME

Bio::DB::Persistent::PrimarySeq - Proxy object for database PrimarySeq representations

SYNOPSIS

Give standard usage here

DESCRIPTION

This is a proxy object which will ferry calls to/from database for the heavy stuff (sequence data) while it stores the simple attributes in memory. This object is obtained from a DBAdaptor.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.

  bioperl-l@bio.perl.org

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via email or the web:

  bioperl-bugs@bio.perl.org
  http://redmine.open-bio.org/projects/bioperl/

AUTHOR - Hilmar Lapp, Ewan Birney

Email hlapp at gmx.net Based in idea largely on Bio::DB::PrimarySeq by Ewan Birney.

Describe contact details here

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

seq

 Title   : seq
 Usage   :
 Function: Overridden from Bio::PrimarySeq::seq to allow for lazy loading.
 Example :
 Returns : 
 Args    :

subseq

 Title   : subseq
 Usage   :
 Function: Overridden from Bio::PrimarySeq::subseq to allow for intelligent
           database queries or delegation to the sequence object.
 Example :
 Returns : 
 Args    :

seq_has_changed

 Title   : seq_has_changed
 Usage   : $obj->seq_has_changed($newval)
 Function: 
 Example : 
 Returns : TRUE or FALSE
 Args    : new value (TRUE or FALSE, optional)

_seq_is_fetched

 Title   : _seq_is_fetched
 Usage   : $obj->_seq_is_fetched($newval)
 Function: 
 Example : 
 Returns : TRUE or FALSE
 Args    : new value (TRUE or FALSE, optional)