Bio::FastParsers::Hmmer::DomTable - Front-end class for tabular HMMER domain parser
version 0.221230
use aliased 'Bio::FastParsers::Hmmer::DomTable'; # open and parse HMMER domain report in tabular format my $infile = 'test/hmmer.domtblout'; my $report = DomTable->new( file => $infile ); # loop through hits while (my $hit = $hit->next_hit) { my ($target_name, $evalue) = ($hit->target_name, $hit->evalue); # ... }
# TODO
Path to HMMER domain report file in tabular format (--domtblout) to be parsed
Shifts the first Hit of the report off and returns it, shortening the report by 1 and moving everything down. If there are no more Hits in the report, returns undef.
undef
# $report is a Bio::FastParsers::Hmmer::Table while (my $hit = $report->next_hit) { # process $hit # ... }
This method does not accept any arguments.
Denis BAURAIN <denis.baurain@uliege.be>
Arnaud DI FRANCO <arnaud.difranco@gmail.com>
This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.
To install Bio::FastParsers, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::FastParsers
CPAN shell
perl -MCPAN -e shell install Bio::FastParsers
For more information on module installation, please visit the detailed CPAN module installation guide.