Bio::Roary::External::Blastp - Wrapper around NCBIs blastp command
version 3.13.0
Wrapper around NCBIs blastp command
use Bio::Roary::External::Blastp; my $blast_database= Bio::Roary::External::Blastp->new( fasta_file => 'contigs.fa', blast_database => 'db', exec => 'blastp', output_file => 'results.out' ); $blast_database->run();
Returns the path to the results file
Andrew J. Page <ap13@sanger.ac.uk>
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007
To install Bio::Roary, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Roary
CPAN shell
perl -MCPAN -e shell install Bio::Roary
For more information on module installation, please visit the detailed CPAN module installation guide.