Bio::Roary::IterativeCdhit - Run CDhit iteratively with reducing thresholds, removing full clusters each time
Run CDhit iteratively with reducing thresholds, removing full clusters each time use Bio::Roary::IterativeCdhit;
my $obj = Bio::Roary::IterativeCdhit->new( output_cd_hit_filename => 'output_cd_hit_filename.fa', output_combined_filename => 'output_combined_filename.fa', number_of_input_files => 5, output_filtered_clustered_fasta= > 'output_filtered_clustered_fasta.fa', ); $obj->run;
Andrew J. Page <email@example.com>
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007