Bio::Roary::PresenceAbsenceMatrix - Create a matrix with presence and absence
Create a matrix with presence and absence. Since its computationally intensive to generate the inputs, calculate them once in the GroupStatistics module and pass them through. use Bio::Roary::PresenceAbsenceMatrix;
my $obj = Bio::Roary::PresenceAbsenceMatrix->new( annotate_groups_obj => $annotate_groups_obj, output_filename => 'gene_presence_absence.Rtab', sorted_file_names => $sorted_file_names, groups_to_files => $groups_to_files, num_files_in_groups => $num_files_in_groups, sample_headers => $sample_headers, ); $obj->create_matrix_file;
Andrew J. Page <firstname.lastname@example.org>
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007