Bio::Tradis - Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses. For more information on the TraDIS method, see http://genome.cshlp.org/content/19/12/2308
Bio-Tradis provides functionality to:
detect TraDIS tags in a BAM file - Bio::Tradis::DetectTags
add the tags to the reads - Bio::Tradis::AddTagsToSeq
filter reads in a FastQ file containing a user defined tag - Bio::Tradis::FilterTags
remove tags - Bio::Tradis::RemoveTags
map to a reference genome - Bio::Tradis::Map
create an insertion site plot file - Bio::Tradis::TradisPlot
Most of these functions are available as standalone scripts or as perl modules.
Carla Cummins <email@example.com>
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007