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NAME

GenOO::Data::File::SAM::CigarAndMDZ - Role that combines SAM CIGAR string with MD:Z tag

SYNOPSIS

    This role when consumed requires specific attributes and provides
    methods to extract information from the CIGAR string in combination
    with the MD:Z tag.

DESCRIPTION

    The cigar string does not usually contain information regarding the deletions.
    For this the MD:Z tag is usually provided. Combining the CIGAR information with
    the MD:Z tag we can extract information such as for example the deletion positions
    on the query sequence.

EXAMPLES

    # Get the location information on the reference sequence
    $obj_with_role->mismatch_positions_on_query_calculated_from_mdz;   # (10, 19)