GenOO::Data::File::SAM::CigarAndMDZ - Role that combines SAM CIGAR string with MD:Z tag
This role when consumed requires specific attributes and provides methods to extract information from the CIGAR string in combination with the MD:Z tag.
The cigar string does not usually contain information regarding the deletions. For this the MD:Z tag is usually provided. Combining the CIGAR information with the MD:Z tag we can extract information such as for example the deletion positions on the query sequence.
# Get the location information on the reference sequence $obj_with_role->mismatch_positions_on_query_calculated_from_mdz; # (10, 19)
To install GenOO, copy and paste the appropriate command in to your terminal.
cpanm
cpanm GenOO
CPAN shell
perl -MCPAN -e shell install GenOO
For more information on module installation, please visit the detailed CPAN module installation guide.