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GenOO-1.5.2
River stage one • 3 direct dependents • 3 total dependents
++
/ GenOO::Junction

NAME

GenOO::Junction - A junction (eg exon-exon) object with features

SYNOPSIS

    # This class represents the connection of two genomic regions in its
    # simplest form. It basically only contains the connecting genomic positions
    
    # To instantiate
    my $junction = GenOO::Junction->new(
        species      => undef,
        strand       => undef,
        chromosome   => undef,
        start        => undef,
        stop         => undef,
    });

DESCRIPTION

    The GenOO::Junction class descibes a genomic junction.

EXAMPLES

    my $junction = GenOO::Junction->new(
        species     => transcript->species,
        strand      => transcript->strand,
        chromosome  => transcript->chromosome,
        start       => exon1->stop,
        stop        => exon2->start,
    );