MyShortRead::SRBed - A perl class to deal with a short read dataset in BED file.
use MyShortRead::SRBed; my $srBed = new MyShortRead::SRBed;
This class is used to extract information from a short read BED file. It first separates the whole file into small pieces of chromosome files and then do bin and sliding window count. Before the object exists, you should call its member function to delete all temporary chromosome files.
This is an object-oriented module.
MyShortRead::MyShortRead MyShortRead::ChromBed
Li Shen, <shenli.sam@gmail.com>
Copyright (C) 2010-2013 by Li Shen
diffReps goes under GNU GPL v3: http://www.gnu.org/licenses/gpl.html
To install PJ::Genome, copy and paste the appropriate command in to your terminal.
cpanm
cpanm PJ::Genome
CPAN shell
perl -MCPAN -e shell install PJ::Genome
For more information on module installation, please visit the detailed CPAN module installation guide.