Proch::Seqfu - Helper module to support Seqfu tools
version 1.5.8
a legacy module for Seqfu utilities
This function prints a sequence in fasta format
This function prints a sequence in FASTQ format
Print a text if $fu_verbose is set to 1
Return the reverse complement of a string [degenerate base not supported]
Check if a string is a DNA sequence, including degenerate chars.
Add newlines using $Proch::Seqfu::fu_linesize as line width
Check if a `seqfu` binary is present and returns its version if found. Note this will require SeqFu > 1.13
If SeqFu is detected returns 1, 0 otherwise, undef when detection of SeqFu version fails.
Andrea Telatin <andrea@telatin.com>
This software is Copyright (c) 2018-2023 by Andrea Telatin.
This is free software, licensed under:
The MIT (X11) License
To install Proch::N50, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Proch::N50
CPAN shell
perl -MCPAN -e shell install Proch::N50
For more information on module installation, please visit the detailed CPAN module installation guide.