Changes for version 1.5.6 - 2023-01-18

  • Uniform support for "-" as Standard Input in accessory utilities

Documentation

Concatenate FASTA or FASTQ files
Find the common sequences between two files
A FASTA/FASTQ sequence counter
Get sequences by name (also using lists)
Extract sequences using patterns
Print sequence hashes
A demo implementation to filter fastx files by length
rename sequences
Testing module
Sort sequences by size
Dereplicate sequences
n50
A script to calculate N50 from one or multiple FASTA/FASTQ files.

Modules

a small module to calculate N50 (total size, and total number of sequences) for a FASTA or FASTQ file. It's easy to install, with minimal dependencies.
Helper module to support Seqfu tools