Bio::FastParsers::Blast::Xml::Parameters - NCBI BLAST DTD-derived internal class
version 0.173510
# TODO
Returns the value of the element <Parameters_entrez-query>.
<Parameters_entrez-query
# $parameters is a Bio::FastParsers::Blast::Xml::Parameters my $entrez_query = $parameters->entrez_query;
This method does not accept any arguments.
Returns the value of the element <Parameters_expect>.
<Parameters_expect
# $parameters is a Bio::FastParsers::Blast::Xml::Parameters my $expect = $parameters->expect;
Returns the value of the element <Parameters_filter>.
<Parameters_filter
# $parameters is a Bio::FastParsers::Blast::Xml::Parameters my $filter = $parameters->filter;
Returns the value of the element <Parameters_gap-extend>.
<Parameters_gap-extend
# $parameters is a Bio::FastParsers::Blast::Xml::Parameters my $gap_extend = $parameters->gap_extend;
Returns the value of the element <Parameters_gap-open>.
<Parameters_gap-open
# $parameters is a Bio::FastParsers::Blast::Xml::Parameters my $gap_open = $parameters->gap_open;
Returns the value of the element <Parameters_include>.
<Parameters_include
# $parameters is a Bio::FastParsers::Blast::Xml::Parameters my $include = $parameters->include;
Returns the value of the element <Parameters_matrix>.
<Parameters_matrix
# $parameters is a Bio::FastParsers::Blast::Xml::Parameters my $matrix = $parameters->matrix;
Returns the value of the element <Parameters_pattern>.
<Parameters_pattern
# $parameters is a Bio::FastParsers::Blast::Xml::Parameters my $pattern = $parameters->pattern;
Returns the value of the element <Parameters_sc-match>.
<Parameters_sc-match
# $parameters is a Bio::FastParsers::Blast::Xml::Parameters my $sc_match = $parameters->sc_match;
Returns the value of the element <Parameters_sc-mismatch>.
<Parameters_sc-mismatch
# $parameters is a Bio::FastParsers::Blast::Xml::Parameters my $sc_mismatch = $parameters->sc_mismatch;
Alias for expect method. For API consistency.
expect
Denis BAURAIN <denis.baurain@uliege.be>
This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.
To install Bio::FastParsers, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::FastParsers
CPAN shell
perl -MCPAN -e shell install Bio::FastParsers
For more information on module installation, please visit the detailed CPAN module installation guide.