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BioX-Workflow-Command-2.2.0
River stage one • 1 direct dependent • 1 total dependent
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Changes for version 2.2.0 - 2017-08-24

  • Added additional interface for custom processing of rules
  • Bug fix for samples are files but output structure should be directories.
  • Bug fixes for sample_rule/file_rule.
  • Bug fix for mixed HPC types.

Modules

BioX::Workflow::Command
Opinionated Bioinformatics Genomics Workflow Creator
BioX::Workflow::Command::run::Rules::Rules
BioX::Workflow::Command::run::Utils::Attributes

Provides

BioX::Workflow::Command::Utils::Create
in lib/BioX/Workflow/Command/Utils/Create.pm
BioX::Workflow::Command::Utils::Files
in lib/BioX/Workflow/Command/Utils/Files.pm
BioX::Workflow::Command::Utils::Files::TrackChanges
in lib/BioX/Workflow/Command/Utils/Files/TrackChanges.pm
BioX::Workflow::Command::Utils::Log
in lib/BioX/Workflow/Command/Utils/Log.pm
BioX::Workflow::Command::add
in lib/BioX/Workflow/Command/add.pm
BioX::Workflow::Command::new
in lib/BioX/Workflow/Command/new.pm
BioX::Workflow::Command::run
in lib/BioX/Workflow/Command/run.pm
BioX::Workflow::Command::run::Rules::Directives
in lib/BioX/Workflow/Command/run/Rules/Directives.pm
BioX::Workflow::Command::run::Rules::Directives::Interpolate
in lib/BioX/Workflow/Command/run/Rules/Directives/Interpolate.pm
BioX::Workflow::Command::run::Rules::Directives::Sample
in lib/BioX/Workflow/Command/run/Rules/Directives/Sample.pm
BioX::Workflow::Command::run::Rules::Directives::Types::Array
in lib/BioX/Workflow/Command/run/Rules/Directives/Types/Array.pm
BioX::Workflow::Command::run::Rules::Directives::Types::CSV
in lib/BioX/Workflow/Command/run/Rules/Directives/Types/CSV.pm
BioX::Workflow::Command::run::Rules::Directives::Types::Config
in lib/BioX/Workflow/Command/run/Rules/Directives/Types/Config.pm
BioX::Workflow::Command::run::Rules::Directives::Types::Glob
in lib/BioX/Workflow/Command/run/Rules/Directives/Types/Glob.pm
BioX::Workflow::Command::run::Rules::Directives::Types::HPC
in lib/BioX/Workflow/Command/run/Rules/Directives/Types/HPC.pm
BioX::Workflow::Command::run::Rules::Directives::Types::Hash
in lib/BioX/Workflow/Command/run/Rules/Directives/Types/Hash.pm
BioX::Workflow::Command::run::Rules::Directives::Types::List
in lib/BioX/Workflow/Command/run/Rules/Directives/Types/List.pm
BioX::Workflow::Command::run::Rules::Directives::Types::Path
in lib/BioX/Workflow/Command/run/Rules/Directives/Types/Path.pm
BioX::Workflow::Command::run::Rules::Directives::Types::Roles::File
in lib/BioX/Workflow/Command/run/Rules/Directives/Types/Roles/File.pm
BioX::Workflow::Command::run::Rules::Directives::Types::Stash
in lib/BioX/Workflow/Command/run/Rules/Directives/Types/Stash.pm
BioX::Workflow::Command::run::Rules::Directives::Walk
in lib/BioX/Workflow/Command/run/Rules/Directives/Walk.pm
BioX::Workflow::Command::run::Utils::Debug
in lib/BioX/Workflow/Command/run/Utils/Debug.pm
BioX::Workflow::Command::run::Utils::Files::ResolveDeps
in lib/BioX/Workflow/Command/run/Utils/Files/ResolveDeps.pm
BioX::Workflow::Command::run::Utils::Files::TrackChanges
in lib/BioX/Workflow/Command/run/Utils/Files/TrackChanges.pm
BioX::Workflow::Command::run::Utils::Samples
in lib/BioX/Workflow/Command/run/Utils/Samples.pm
BioX::Workflow::Command::run::Utils::WriteMeta
in lib/BioX/Workflow/Command/run/Utils/WriteMeta.pm
BioX::Workflow::Command::stats
in lib/BioX/Workflow/Command/stats.pm
BioX::Workflow::Command::validate
in lib/BioX/Workflow/Command/validate.pm

Other files