Bio::DB::Bam::PileupWrapper -- Add high-level methods to Bio::DB::Bam::Pileup
See "The generic fetch() and pileup() methods" in Bio::DB::Sam for usage of the pileup() method.
See Bio::DB::Bam::Pileup for documentation of this object's methods. This class is used by the high-level API to return Bio::DB::Bam::AlignWrapper objects from the call to alignment() rather than Bio::DB::Bam::Alignment.
Bio::Perl, Bio::DB::Sam, Bio::DB::Bam::Constants
Lincoln Stein <lincoln.stein@oicr.on.ca>. <lincoln.stein@bmail.com>
Copyright (c) 2009 Ontario Institute for Cancer Research.
This package and its accompanying libraries is free software; you can redistribute it and/or modify it under the terms of the GPL (either version 1, or at your option, any later version) or the Artistic License 2.0. Refer to LICENSE for the full license text. In addition, please see DISCLAIMER.txt for disclaimers of warranty.
To install Bio::DB::Bam, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::DB::Bam
CPAN shell
perl -MCPAN -e shell install Bio::DB::Bam
For more information on module installation, please visit the detailed CPAN module installation guide.